RnoALTA0013386-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000030630 | Ehmt2
Description
euchromatic histone lysine methyltransferase 2 [Source:RGD Symbol;Acc:1302972]
Coordinates
chr20:4585195-4585549:+
Coord C1 exon
chr20:4585195-4585377
Coord A exon
chr20:4585453-4585482
Coord C2 exon
chr20:4585483-4585549
Length
30 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CGGTACTTAAATCTGAGCAGCCT
3' ss Score
1.16
Exon sequences
Seq C1 exon
TGCCCGAATGCGAGGACACGGAGAGCCAAGGCGCCCACCCTGTGATCCCCTGGCCGACACCATTGACAGCTCGGGGCCTTCTCTGACTCTGCCTAATGGCGGCTGCCTCTCAGCTGTGGGTCTGCCCCCAGGGCCAGGCCGGGAAGCCCTGGAAAAAGCCTTGGTCATCCAGGAGTCCGAGAG
Seq A exon
CCTACCTTCTCCCCCTCCGTCCCCGGGCAG
Seq C2 exon
GAGGAAGAAGCTGCGGTTCCACCCGCGGCAGCTCTACCTGTCGGTGAAGCAGGGGGAGCTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030630-24-27,24-26-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.839 A=NA C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(17.9=58.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTCTGACTCTGCCTAA
R:
GGAACCGCAGCTTCTTCCTC
Band lengths:
128-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]