RnoALTA0014429-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50189569-50191330:+
Coord C1 exon
chr16:50189569-50189731
Coord A exon
chr16:50191219-50191223
Coord C2 exon
chr16:50191224-50191330
Length
5 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
TAATTTATTTTTTTTAAAAGAAC
3' ss Score
4.61
Exon sequences
Seq C1 exon
AATGTATCACTAAGGTCTTCAAAGACATCAGCTTTCAAGGAGGTGACCTAAGTACTGTTTTCACACCGAGTGCCACGTACTGCCAGCTGGTCTGCACACACCACCCACGTTGCTTGCTCTTCACGTTCATGGCTGAGTCATCTTCTGACGATCCCACCAAATG
Seq A exon
AACAG
Seq C2 exon
GTTTGCCTGCATCCTGAAGGACAGTCTCACAGAAACATTGCCGATGGTACACATGACAGGAGCGGTTTCTGGATATTCCTTCAAGCAATGCCCTCAGCAATTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684-4-8,4-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(63.1=96.4)
A:
NA
C2:
PF0002421=PAN_1=PD(35.7=81.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCACGTTCATGGCTGA
R:
CCTGTCATGTGTACCATCGGC
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]