RnoALTA0015450-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000004440 | Fignl1
Description
fidgetin-like 1 [Source:RGD Symbol;Acc:1307112]
Coordinates
chr14:91898517-91901914:-
Coord C1 exon
chr14:91901799-91901914
Coord A exon
chr14:91898618-91898635
Coord C2 exon
chr14:91898517-91898617
Length
18 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TGATACTGATTTGCCTTCAGTTT
3' ss Score
6.65
Exon sequences
Seq C1 exon
CTCAACCTGTGCTGATCACATCGGGAAGTATTCAGTACCTGGTAAAGTACATGGTGCTTCACGTGGAACTTGGCCTTGATTTCTGGCATTGGTCATAATCAGCAGAGTTCTCTCTG
Seq A exon
TTTTGTCTTGTGTTATAG
Seq C2 exon
AGCCTTTGACATGGAGACATCCAGCTCCAGGTCTGTGCAGGTGGATGACTGGCAGAAGAATTACTCTGTGGTTGCATCCAGCATATGTACACCTAAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004440-6-2,6-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000424=AAA=WD(100=19.3),PF093365=Vps4_C=WD(100=6.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACGTGGAACTTGGCCTT
R:
CAGTCATCCACCTGCACAGAC
Band lengths:
111-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]