RnoALTA0015869-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000043370 | Fubp1
Description
far upstream element binding protein 1 [Source:RGD Symbol;Acc:1591892]
Coordinates
chr2:257447746-257449568:+
Coord C1 exon
chr2:257447746-257447891
Coord A exon
chr2:257449471-257449475
Coord C2 exon
chr2:257449476-257449568
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
CTTGCCATTGTCTGTTGAAGTGC
3' ss Score
5.24
Exon sequences
Seq C1 exon
GTCAAGCAGTTCCTGCTCCTGCTGGGGCCCCACCAGGTGGTCAGCCAGATTACAGTGCAGCCTGGGCTGAATACTATAGACAGCAAGCAGCATACTATGCCCAGACCAGTCCCCAGGGAATGCCGCAGCATCCGCCAGCACCTCAG
Seq A exon
TGCAG
Seq C2 exon
GTTTGATCCAGCCAGTATAGAACTAGCTCTGTAGGGGTGAGGAGGACTGTGCTGTGTATCATCCTTGATTGTGTTCCTTCAAGGAGCATTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043370-25-33,25-32,25-31-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PD(20.7=12.2),PF090055=DUF1897=WD(100=67.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTATGCCCAGACCAGTCCC
R:
CAGTCCTCCTCACCCCTACAG
Band lengths:
103-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]