RnoALTA0015972-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000051171 | G6pc
Description
glucose-6-phosphatase, catalytic subunit [Source:RGD Symbol;Acc:2644]
Coordinates
chr10:89294573-89295817:+
Coord C1 exon
chr10:89294573-89295223
Coord A exon
NA
Coord C2 exon
chr10:89295717-89295817
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
CTTTGTCCTCCTCGGCCCAGGTC
3' ss Score
8.5
Exon sequences
Seq C1 exon
GGAGAAGGCCAAGAGATGGTGTGAGCGCCCCGAGTGGGTCCACCTTGACACTACACCCTTTGCCAGCCTCTTCAAAAACCTGGGGACCCTCTTGGGGTTGGGGCTGGCCCTCAACTCCAGCATGTACCGCAAGAGCTGCAAAGGAGAACTGCGCAAGTCGCTCCCATTCCGTTTGGCCTGCATCGTGGCCTCCTTGGGCCTGCTGCATCTCTTTGACTCGCTGAAGCCCCCGTCCCAGATTGAGTCGATCTTCTACATCTTGTCTTTCTGCAAGAGTGCGACCGTCCCCTTTGCATCTGTCAGTCTTATCCCCTACTGCCTAGCCCGGCTCCTGGGACAGACACACAAGAAGTCTTTGTAAAGCGTTAAGTCTCTGACACAAGTCAGCGGCCGTGCAAAGGACTAGGAGCAACCCAAGCCTTGTGCAACCCAGTGTGGGGCCAGAGGTGTTCACAGCCACCCTGGTAGCCCTGTCTTTCTTTGCCATCGTAACCAAAAAG
Seq A exon
NA
Seq C2 exon
GTCTGCGTGCCATAGGACTCATCACTGCTTCCCTGACCACGCTGCTGGACCCTGCATTGCTGAACCCCATGCTGCTGGACCCTGTGGTGTACGGTGGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051171-6-6,6-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PD(8.3=7.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGTAGCCCTGTCTTTCT
R:
GTTCAGCAATGCAGGGTCCAG
Band lengths:
106-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]