RnoALTA0016258-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007359 | Gca
Description
grancalcin [Source:RGD Symbol;Acc:1306589]
Coordinates
chr3:48658972-48661236:+
Coord C1 exon
chr3:48658972-48659030
Coord A exon
chr3:48660890-48661135
Coord C2 exon
chr3:48661136-48661236
Length
246 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TTTTGTGTTTTGTGAGACAGGGT
3' ss Score
3.4
Exon sequences
Seq C1 exon
ATTTCTTTAGGCGAAGAGACCACTTGCAACAAGGGATCGTGAACTTCATGTATGAAGAT
Seq A exon
GGTCTCTCTGTGTAACCCAGTGGAACAGAAACTCGTGGACCTCCTACCTTGTGCCCCATTGTTTGCAGAAATTCAAGACTTGCAAACCCTTGGCCATACTAAAGATTTCAACTGAAGATGCCTTTCTCTTTCATTAGTGAAGGCATAGATAACCTGAAATGTCAACTGTCTTTGAATCAAGGAGTTTTGAGGACTGGGTCATTTTAGTGATGGGTCAGCATTCATTCACCTTTTTTTCTGTTACAG
Seq C2 exon
CCTGGTGCTGCTCCTAGTGAATGGCAACAGTTTAAAGAAAAGCAAGTAATCTGTTACTGTTTAACTGTTCAGAAATTCTATGTTGAATTGGTAGTGTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007359-15-13,15-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTAGGCGAAGAGACCACT
R:
GTCCACACTACCAATTCAACATAGA
Band lengths:
157-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]