Special

RnoALTA0016592-2/2 @ rn6

Alternative 3'ss

Gene
Description
GLI family zinc finger 4 [Source:RGD Symbol;Acc:1560906]
Coordinates
chr7:116673192-116675170:+
Coord C1 exon
chr7:116673192-116673344
Coord A exon
chr7:116675075-116675090
Coord C2 exon
chr7:116675091-116675170
Length
16 bp
Sequences
Splice sites
5' ss Seq
ACGGTATTT
5' ss Score
5.46
3' ss Seq
CCTCAATCCCCTGCCTCCAGGCT
3' ss Score
6.61
Exon sequences
Seq C1 exon
GTCCCAAGGTGCCTCCTTGAGCAGGACTCAGGAAGATGGCTGCACTAGAGGGTGTAGAGGAGGCCCCTCCTGTCTTATCACTCAACAGTCTCTCATCACCAGGGACACCTGGAGACCAGCACCATGTGGCACTCCATGGACACCCTCACCACG
Seq A exon
GCTCTCCCTGTTCCAG
Seq C2 exon
CCCTGAGGTGCCTTCCCAGACAGCAGACCCAGACCTCCGAGTCGTAGAGGAAGTGGAGAGCACCAGAGATACCTGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021765-3-4,3-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact

Protein isoform when splice site is used (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCATCACCAGGGACACC
R:
CTCTACGACTCGGAGGTCTGG
Band lengths:
114-130
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]