RnoALTA0017673-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000018870 | Hapln2
Description
hyaluronan and proteoglycan link protein 2 [Source:RGD Symbol;Acc:621854]
Coordinates
chr2:187398312-187401344:-
Coord C1 exon
chr2:187401289-187401344
Coord A exon
chr2:187398417-187398420
Coord C2 exon
chr2:187398312-187398416
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CTATCAACTGTGCCCTGCAGACA
3' ss Score
7.51
Exon sequences
Seq C1 exon
GACAGGAAGCTGCTGAGCACTGCTCCCTTTGCCTCTGAGGAGAGATCATCTTGCAG
Seq A exon
ACAG
Seq C2 exon
TGCTTGCTGACATCACCATGCCAAGCTGGATCCCTCTCCCTGCGTTCTGCTGCCTCCTTCTCCCCTGGGCCTTCACCGTCTTTCACAAAACCCTGGGGAACCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018870-2-6,2-5,2-4-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTTTGCCTCTGAGGAGAG
R:
GAGAAGGAGGCAGCAGAACG
Band lengths:
95-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]