RnoALTA0018311-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000011175 | Hnrnpa2b1
Description
heterogeneous nuclear ribonucleoprotein A2/B1 [Source:RGD Symbol;Acc:1310403]
Coordinates
chr4:81240148-81240563:-
Coord C1 exon
chr4:81240353-81240563
Coord A exon
chr4:81240245-81240281
Coord C2 exon
chr4:81240148-81240244
Length
37 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
ATTCACTAAAAATTGCTTAGTTG
3' ss Score
0.91
Exon sequences
Seq C1 exon
GAGTCTGGGAAACCAGGAGCCCATGTGACTGTGAAGAAACTGTTCGTTGGTGGAATTAAGGAAGATACTGAGGAGCATCACCTTAGAGATTACTTTGAAGAATATGGAAAAATTGATACTATTGAAATAATTACTGATAGGCAGTCTGGAAAAAAAAGAGGCTTTGGCTTTGTTACCTTTGATGACCATGATCCTGTGGATAAGATTGTCT
Seq A exon
TTGGCATTAACAAATTATTGTTTTTATTCCAGTGCAG
Seq C2 exon
AAATATCACACCATAAATGGTCACAATGCAGAAGTTAGAAAGGCATTGTCTAGACAAGAAATGCAGGAAGTCCAAAGTTCTAGGAGTGGAAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011175-6-12,6-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(81.4=80.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTTTGGCTTTGTTACCT
R:
TGGACTTCCTGCATTTCTTGTCT
Band lengths:
128-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]