RnoALTA0018602-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000034066 | Hspa8
Description
heat shock protein family A (Hsp70) member 8 [Source:RGD Symbol;Acc:621725]
Coordinates
chr8:44992223-44997734:+
Coord C1 exon
chr8:44992223-44992421
Coord A exon
chr8:44997384-44997633
Coord C2 exon
chr8:44997634-44997734
Length
250 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
GGGAGGCCACAGCTGAGCAGACC
3' ss Score
-9.45
Exon sequences
Seq C1 exon
GTGTATGAAGGTGAAAGGGCCATGACCAAGGACAACAACCTGCTTGGGAAGTTTGAGCTCACAGGCATACCTCCAGCACCCCGTGGGGTTCCTCAGATTGAGGTTACTTTTGACATTGATGCCAATGGCATCCTCAATGTTTCTGCTGTAGATAAGAGCACAGGAAAGGAGAACAAGATCACCATCACCAATGACAAGG
Seq A exon
ACCGCAGAGCTGGCTGTTCACACTAAGGGGCTAGCTTAGCACACCTCAGCTCAGCTCTGCCCAGCTCCAGTTGGCTTGTGCAGGGAGGTGACACAGGAGACTTGAGGACAAAACCCTCTGGTTTTGCAGCCCCTTGTGTCCGAGTCCTGTACGGTGGCTTAGGAACACTCCACCCCATCACTTAGGCCATTTGCCACTTTCTAGGGTCCTATAGATTCAAAGGAATGCCTTGTGCCTTCAAGCACTTTAG
Seq C2 exon
ACTCCAGGAGGGAGAGCGATGAAGATGTGGATAAAGAGCAGACACTGGTGAGAGAGTATTGAGGGAATCGTGGATCCCCAATGGAAGGGACCCTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034066-17-25,17-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(10.9=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTGAAAGGGCCATGACC
R:
TGGTCAAGGGTCCCTTCCATT
Band lengths:
293-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]