RnoALTA0020213-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000057315 | Kcnh3
Description
potassium voltage-gated channel subfamily H member 3 [Source:RGD Symbol;Acc:71070]
Coordinates
chr7:140894714-140895777:+
Coord C1 exon
chr7:140894714-140894848
Coord A exon
chr7:140895624-140895643
Coord C2 exon
chr7:140895644-140895777
Length
20 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TCTACAGCTTACTGTCACAGGAC
3' ss Score
4.61
Exon sequences
Seq C1 exon
GGCTTCCATTCTGGTGTCTCCTGGATGTGATACCTATAAAAAACGAGAAGGGGGAGGTGGCCCTCTTCCTGGTCTCTCACAAGGACATCAGTGAGACCAAGAACCGAGGAGGCCCTGACAACTGGAAGGAGAGAG
Seq A exon
GACCCTCTCTTTTGTTGCAG
Seq C2 exon
GTGGTGGCCGACGCAGATATGGTCGGGCAGGATCCAAAGGCTTTAATGCCAATCGGAGGCGCAGCCGGGCGGTTCTCTACCACCTCTCTGGTCACCTGCAGAAACAACCCAAGGGCAAGCACAAACTCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057315-6-4,6-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.0=67.4),PF051168=S6PP=PD(38.2=73.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCTTCCTGGTCTCTCACA
R:
TTGGATCCTGCCCGACCATAT
Band lengths:
112-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]