RnoALTA0020233-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000001656 | Kcnj15
Description
potassium voltage-gated channel subfamily J member 15 [Source:RGD Symbol;Acc:621662]
Coordinates
chr11:35545291-35545759:+
Coord C1 exon
chr11:35545291-35545391
Coord A exon
NA
Coord C2 exon
chr11:35545632-35545759
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTCTGT
5' ss Score
3.05
3' ss Seq
ACTTGTTTTTTGACTGACAGTGA
3' ss Score
6.86
Exon sequences
Seq C1 exon
CAGAAATGAATCAGAGTTCCTTAGTAAGAACTTCGGTTTCTTTTATACACAGGTGCCTGAAGAGCTGGGGGGTCCTTGCCATTCCAAACCGCCCTGTGCTG
Seq A exon
NA
Seq C2 exon
TGAACACCAAGAGTGCTTCTTCGCTTCGAAAAGCCCTCAGCACCTACCTTTCCAAGGCACCCCGGATCACTTCCTTGCCTGGTCTTAATTTCCCGCCCACCCAGGAGTCCGCATTGGGCACTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001656-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCCTTGCCATTCCAAACC
R:
GGTGGGCGGGAAATTAAGACC
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]