RnoALTA0020294-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57403454-57405227:+
Coord C1 exon
chr13:57403454-57403624
Coord A exon
chr13:57404998-57405059
Coord C2 exon
chr13:57405060-57405227
Length
62 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
TATTCTTCTTTTAAATTAAGGTT
3' ss Score
6.68
Exon sequences
Seq C1 exon
GTGTGTGTGCTTGTGTTGCAGAGAAGGGCAGCAGTCACCTGAACAGTGGCAGAAGACGTATGGGAGGTGCTCAGGAAATGAAGTCTACCACATCGTTCTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGAAGAGTTTTACCTATGCTTCTTTCCATGCACACAAAAA
Seq A exon
GTTTGGTGTCTGCTTGGTTGGTGTTAGGAGGGAGGATAATAAAAACATTTTGCTGAATCCAG
Seq C2 exon
GTCCTCGATACATTATGAATGCTTCAGACATATGTTTTTATATTAATATTACCAAAGAAGAAAATTCAGCATTTAAGAATCAAGACCAACAGAGAAAAAGTAATGTGTCAAGGTCATTTTATCATGGGCCTTCCAGATTGCCTGTCCACAGTATCATTGCCAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312-24-28,24-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.122
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(50.4=100)
A:
NA
C2:
PF0349313=BK_channel_a=PD(8.0=11.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACGTATGGGAGGTGCTCA
R:
TGAAGCATTCATAATGTATCGAGGAC
Band lengths:
145-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]