RnoALTA0020698-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000004680 | Kif5c
Description
kinesin family member 5C [Source:RGD Symbol;Acc:1308539]
Coordinates
chr3:35220388-35221074:+
Coord C1 exon
chr3:35220388-35220464
Coord A exon
NA
Coord C2 exon
chr3:35220968-35221074
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CCTGGCCTGGCTTGCAGAAGGCT
3' ss Score
-1.15
Exon sequences
Seq C1 exon
AAAAAATGCACGAAGTCAGTTTCCAAGATAAGGAAAAGGAGCACCTGACGAGGCTGCAGGATGCTGAGGAAGTGAAG
Seq A exon
NA
Seq C2 exon
GCTCTGGAGCAGCAGATGGAGAGTCACCGGGAAGCGCACCAAAAGCAGCTGTCCAGACTTCGTGATGAGATTGAGGAGAAGCAGAGAATCATTGATGAGATTCGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004680-38-32,38-31-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.568
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGATGCTGAGGAAGTG
R:
TCATCACGAAGTCTGGACAGC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]