RnoALTA0021087-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000043426 | Kyat3
Description
kynurenine aminotransferase 3 [Source:RGD Symbol;Acc:1359262]
Coordinates
chr2:248676145-248680123:+
Coord C1 exon
chr2:248676145-248676271
Coord A exon
chr2:248679937-248680031
Coord C2 exon
chr2:248680032-248680123
Length
95 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CACCCCTTTTGAACATGCAGGCA
3' ss Score
6.66
Exon sequences
Seq C1 exon
ATTATTTGAAATCTGCTTTTGTGTTTTCCCTTCCCAGCTCGGCTGGAGCATTGGCCCTGGTCACCTGATAAAACATTTGCGGACTGTTCAGCAAAACAGTGTATACACGTGTGCAACTCCTTTACAG
Seq A exon
GCAGCCTTGGCCGAGGCTTTTTGGATCGATATCAAGCGCATGGATGACCCAGAGTGTTACTTCAATTCTCTGCCAAAGGAATTAGAAGTTAAGAG
Seq C2 exon
AGATCGGATGGCCTGTTTACTTAACAGCGTTGGCCTGAAACCCATCATCCCTGACGGGGGCTACTTCATCATTGCCGATGTGTCTTCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043426-19-18,19-17,19-16-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PU(19.5=72.1)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(39.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTTCCCTTCCCAGCTCG
R:
ATGATGAAGTAGCCCCCGTCA
Band lengths:
179-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]