RnoALTA0022212-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000061373 | Loxl3
Description
lysyl oxidase-like 3 [Source:RGD Symbol;Acc:1311011]
Coordinates
chr4:113866804-113869018:+
Coord C1 exon
chr4:113866804-113867512
Coord A exon
chr4:113868675-113868857
Coord C2 exon
chr4:113868858-113869018
Length
183 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TCTCCTTCTCTGTCCCTTAGTGC
3' ss Score
10.42
Exon sequences
Seq C1 exon
GGGCCCTCAGGACATTAGTTTTCTTTGTGGGACCTTGTTCCCATGGTCCAGCTCTGGAATTGGACTGGTCTGTTGATACTCTGTCTAGCTGGAGATGTGGAGAAACGGCTACGGGCTGAAAAGCTTCCTGCGGCCACAGGGGCCATCCTGCTGTCCCGAAACCATTTGCAAGTCCAGCATCCTGAACGCCGCTGCCTGGCCTCCCAACCTGCGGGAAAAGAAAGCTTCATTGAGCCCGGAGGAGTGGGAGGGGGTGGCGTGGCTGCAGCCAGCTCCACAGGGGAGGGGAAGATCTAGAGGAGGGAACTGGCCTGGCCCGAATGGAGGGAGAAAGCGGAATGTGGGAGGGCTCTAGAGGACGTAGGAGGGACCAACGAAGAGGGGGGAGGAAGGGGGGGTCCAGTCTCCCCTGGCCGAACACTTTTTTTCTGAGAAGTCCTGAAAGTAATCTCCAGGACCAGGACTCTGCTTCCAGCCTCTGGAGTTCTGCCTAGTCGAAG
Seq A exon
TGCCCCCCCTCCTTGAGCCCTAACCGCCATGAGAGCTGTCAATGTGTGCTATTGCTGCCCGTGGCGACTACTGCTGCTGCACTTTCTGTGCAGCTCCAGTATGGGGTCTCCGTCTCCTTCTACCGACCCAGAGAAGAAGGTAGGAAGCCAGGGGCTGAGGTTCCGTCTGGCTGGCTTTCCTAG
Seq C2 exon
AAAGCCCTATGAGGGCCGTGTGGAGATACAGCGAGCCGGCGAATGGGGCACCATCTGTGATGATGACTTCACGCTGCAGGCTGCCCACGTCCTCTGCCGGGAGCTGGGCTTCACAGAAGCCACCGGTTGGACCCACAGTGCCAAATACGGCCCAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061373-1-3,1-2,1-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.085
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0053013=SRCR=PU(57.3=51.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAGCGGAATGTGGGAGG
R:
CCTGCAGCGTGAAGTCATCAT
Band lengths:
253-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]