RnoALTA0022415-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000016128 | Lrrc14
Description
leucine rich repeat containing 14 [Source:RGD Symbol;Acc:1560202]
Coordinates
chr7:117777324-117778454:+
Coord C1 exon
chr7:117777324-117777677
Coord A exon
NA
Coord C2 exon
chr7:117778285-117778454
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
CACATGTGGCCCGCTTTCAGCAC
3' ss Score
6.18
Exon sequences
Seq C1 exon
GGGCCTGTCTGCCCAGTCCAGCACCATGCACACGCTTGTGTTCCTCAGCACACGCCAGGTGCTTCAGTGCCAGCCAGCTGCCTGCCAGGCCTTGCCCCTGCTGCCCCGAGAACTCTTCCCTCTGCTGTTCAAGGTGGCCTTCATGGACAAGAAGACAGCCGTGCTGCGTGAGCTGGTGCACACGTGGCCCTTTCCCCTCCTCAGTTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCTGCTGCAGGAACGGCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGGACTGACCGCCCGGATACATGCTCGAGAAGCAGAGGCTGGCACACAGCCCGTTTGCAG
Seq A exon
NA
Seq C2 exon
CACCTAGCCAGCCTGAGGCTGCATTATGTGCATGGGGACTCCAGACAGCCCTCCGTGGATGGTGAGGACAACTTTCGCTACTTCCTGGCCCAGATGGGCCGGTTCATCTGTCTTCGGGAGCTCAGCATTGGCTCTTCTCTCCTCTCAGGCAGGCTGGATCAACTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016128-9-15,9-14,9-13-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTCAAGGTGGCCTTCAT
R:
GCTCCCGAAGACAGATGAACC
Band lengths:
352-763
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]