RnoALTA0022744-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000024530 | Lyrm1
Description
LYR motif containing 1 [Source:RGD Symbol;Acc:1563498]
Coordinates
chr1:189666301-189679277:+
Coord C1 exon
chr1:189666301-189666401
Coord A exon
NA
Coord C2 exon
chr1:189679119-189679277
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGG
5' ss Score
5.2
3' ss Seq
TTACTCTGGTGGGTCTGAAGATG
3' ss Score
3.61
Exon sequences
Seq C1 exon
GATAGAGCCCGGTGTGGCGAAGGCTCGGCAGAGCTCCTGGCACCGCCTCTTCCCAGCCGACTCCTGTGGGTGGGGGAAGGCAGGAGTGACGCTGAGTGAGT
Seq A exon
NA
Seq C2 exon
ATGACAGCAGCAAGCCGACAAGAAGTCCTCGGCCTCTACCGAAGCATTTTCAGGCTTGCACGGAAATGGCAGGCAGCATCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTACATACTAAATGAAGCCAGAACACTGTTCCAGAAAAACAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024530-7-3,7-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0534710=Complex1_LYR=PU(68.7=86.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGTGACGCTGAGTGAGT
R:
GTCTTCCATCTGCCCTGATGC
Band lengths:
117-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]