Special

RnoALTA0023287-1/2 @ rn6

Alternative 3'ss

Gene
Description
membrane associated ring-CH-type finger 7 [Source:RGD Symbol;Acc:1308993]
Coordinates
chr3:46308036-46309940:+
Coord C1 exon
chr3:46308036-46308203
Coord A exon
NA
Coord C2 exon
chr3:46309664-46309940
Length
0 bp
Sequences
Splice sites
5' ss Seq
CATGTATGT
5' ss Score
5.71
3' ss Seq
TTCCTTCTTCATATTCACAGGGA
3' ss Score
8.18
Exon sequences
Seq C1 exon
ATTCTTCTTGGAGGCCTGGTCAAGTTCCGAGATCTTCTTCAATGGTCCTTGGTTCATTTGGAACAGACTTGATGAGAGAGAGGAGAGATCTGGAGAGGAGAAGGGACTCCTCCATTAGCAGTCTTATGGACTATAGTCACCGGAGTGGGGATTTCACAGCTCCAGCAT
Seq A exon
NA
Seq C2 exon
GGAGCAAGACCAAAAGAGAATGCCGCGAACACTTTACAGTTGAATTCATCCACCAATCACCAACTGCCTTCTGAGCATCAGACAGTACCAAGTTCTAGGGACTCTAGTAGAAGTTCTTTCAGATCCCATTTTTCTCCAAGACAATCAGAATCTTTTCGAAACAGTTCACATCCTGCATTTTCATATCTTTCAAGTAGAAATGAAACTCCAACTATAAGCAGTTCAGAAAGGGCTGGCTCGTCTCAGAGACCATTTCAAGAATCTTCTGACAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006241-14-10,14-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact

ORF disruption when splice site is used (sequence exclusion)

No structure available
Features
Disorder rate (Iupred):
  C1=0.982 A=NA C2=0.809
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATAGTCACCGGAGTGGGG
R:
ATGCTCAGAAGGCAGTTGGTG
Band lengths:
117-152
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]