RnoALTA0023896-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000017510 | Mfge8
Description
milk fat globule-EGF factor 8 protein [Source:RGD Symbol;Acc:3083]
Coordinates
chr1:140845479-140846253:-
Coord C1 exon
chr1:140846182-140846253
Coord A exon
NA
Coord C2 exon
chr1:140845479-140845786
Length
0 bp
Sequences
Splice sites
5' ss Seq
TATGTGCGT
5' ss Score
1.54
3' ss Seq
AAGTCCTAAACTTTCTCCAGGGG
3' ss Score
4.28
Exon sequences
Seq C1 exon
GTCTTCCAGGGCAACTTGGACAACAACTCCCACAAGAAGAACATCTTTGAGAAACCTTTCATGGCTCGCTAT
Seq A exon
NA
Seq C2 exon
GGGTTGACTCAAGACTAAAGGGAACCTCTGGTTGCCCACCCGTCTCTGCACACCGCACATCCCTCCATGTTCCATTCCTGGAAGGAGAGGCCCACGTCCGCTTGCTGCCCCTTGGGTCACCAGATCCTGCCTCTTATCTCCTGAGACCCCTCTTGACCCTCGCTCTGGAGCCTCGGTTGACAAGAGGACTGTCGGGTCTGGAGAGATAGATGGGCTCTGGGTGGTTGGCGAGCTGGCTATGGGACCTCTGCTGGCTTGCTACCCAAGCTAACAAGCAGATTCCAAAATACATTTGTGCTCTCCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017510-27-15,27-14-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(19.2=100)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACCTTTCATGGCTCGCT
R:
GGTCAAGAGGGGTCTCAGGAG
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]