RnoALTA0024879-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000075 | Mtf2
Description
metal response element binding transcription factor 2 [Source:RGD Symbol;Acc:1304727]
Coordinates
chr14:2697778-2700977:-
Coord C1 exon
chr14:2700740-2700977
Coord A exon
chr14:2697975-2697978
Coord C2 exon
chr14:2697778-2697974
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
ATGCCTATGATTGTTTTCAGAAA
3' ss Score
6.33
Exon sequences
Seq C1 exon
CAAAATGGCGAAGGGCTGTAGCGAAGTGGTCTGTGTTTGAGGCCGGTGTGAGAACGCATATTCTCCTCCCCAATCCTCGTCCCCAAGGAATTCAGTGCGTGTGTGTGCGTGAGCGCAGGGTTCCCGCTGGGGCGGGTGCCCAGTGAGTGCCCGGACTCGCGGGGAAGCGCCCACGGGAACGTGATTGCTTCTATTTTCCTGTATGAAGCGGTTGGCACCACTTAAGTGACCGAATGAG
Seq A exon
AAAG
Seq C2 exon
GTTTAACTGAGGAGGGAAGACCCACCCTGACTATGTGAGGCACCAAACCCATGGGCTGGGGTCCTGGATTGAATCAAATGGAGGAAGCAAGCTGAGCATGAACATTGACCTTCCTGACTGCAGATAACAGTGGGATAGCTGCCTCCTGCTGCTTCTACCATGCCTCCCCCTTCCATGATGGACTGTACTCTGAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000075-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGTATGAAGCGGTTGGC
R:
CATGGGTTTGGTGCCTCACAT
Band lengths:
96-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]