RnoALTA0025200-4/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53795552-53795976:+
Coord C1 exon
chr10:53795552-53795670
Coord A exon
chr10:53795780-53795896
Coord C2 exon
chr10:53795897-53795976
Length
117 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TACAATTTTGGGTTATTTAGGCC
3' ss Score
5.75
Exon sequences
Seq C1 exon
GTGAGTTTTCCCGACAGCTGGATGAGAAAGATGCTATGGTTTCTCAGCTCTCCCGAGGCAAACAAGCGTTTACACAACAGATTGAGGAGCTAAAGAGGCAGCTAGAAGAAGAGTCCAAG
Seq A exon
GCCAAGAACGCGCTGGCCCACGCCCTGCAGTCCGCTCGCCACGACTGTGACCTTCTGCGGGAGCAGTATGAGGAGGAGCAGGAAGCCAAGGCCGAGCTGCAGAGGGCCATGTCCAAG
Seq C2 exon
GCCAACAGCGAGGTGGCCCAGTGGAGGACGAAATATGAGACGGATGCCATCCAGCGCACGGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695-127-151,127-150,127-149,127-148-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.825 A=NA C2=0.636
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100),PF059116=DUF869=FE(43.3=100),PF0003816=Filament=PU(11.8=87.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF059116=DUF869=PD(23.3=31.8),PF0003816=Filament=FE(22.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGTTTTCCCGACAGCTGG
R:
CTCCTCCAGCTCCTCCGTG
Band lengths:
194-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]