RnoALTA0025235-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:850151-851242:+
Coord C1 exon
chr10:850151-850239
Coord A exon
chr10:851119-851131
Coord C2 exon
chr10:851132-851242
Length
13 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GGCAGCTTCATTCCCTCCAGGAA
3' ss Score
7.35
Exon sequences
Seq C1 exon
GACCTGGCAGCAGCTGAGAGAGCTCGCAAGCAAGCTGACCTGGAGAAGGAGGAGCTGGCTGAGGAGCTGGCTAGCAGCTTATCAGGAAG
Seq A exon
GAATACACTGCAG
Seq C2 exon
GATGAGAAGCGCCGCCTGGAGGCAAGGATCGCCCAGCTGGAGGAGGAGCTGGAGGAAGAGCAGGGCAACATGGAGGCCATGAGTGACAGAGTCCGCAAGGCCACATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880-58-68,58-67,58-66-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.881
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGGAGGAGCTGGCTGAG
R:
CTCTTCCTCCAGCTCCTCCTC
Band lengths:
107-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]