RnoALTA0025291-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000050042 | Myh8
Description
myosin heavy chain 8 [Source:RGD Symbol;Acc:620356]
Coordinates
chr10:53838365-53839135:+
Coord C1 exon
chr10:53838365-53838455
Coord A exon
chr10:53838746-53838806
Coord C2 exon
chr10:53838807-53839135
Length
61 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
TGTACGTGTTTGATTTCCAGGCC
3' ss Score
8.8
Exon sequences
Seq C1 exon
GAAGGAGTTTGAAATCAGCAATCTAATAAGCAAAATTGAAGATGAACAAGCTGTGGAAATCCAGTTGCAGAAGAAGATCAAAGAGCTGCAG
Seq A exon
GCCCGCATCGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCAGGGCCAAAGCAG
Seq C2 exon
AGAAGCAGCGCTCTGACCTCTCCCGGGAACTGGAGGAGATCAGCGAGAGGCTGGAAGAAGCCGGCGGGGCCACATCTGCTCAGGTGGAGTTGAATAAGAAGCGGGAAACGGAGTTCCAGAAGCTTCGCAGGGACCTGGAGGAGGCCACCCTGCAGCATGAAGCCACATCAGCCGCTCTTCGGAAGAAGCACGCGGACAGTATGGCGGAGCTCGGGGAGCAGATCGACAACCTGCAGCGGGTGAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGCTGAAGATGGAGATCGACGACCTTAGCAGTAATGCAGAGGCCATCGCCAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050042-30-33,30-32-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.892
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=FE(26.3=100),PF0157614=Myosin_tail_1=FE(7.8=100),PF079267=TPR_MLP1_2=PU(0.8=3.2)
A:
NA
C2:
PF087025=Fib_alpha=PD(14.9=13.1),PF0157614=Myosin_tail_1=FE(33.5=100),PF079267=TPR_MLP1_2=PD(97.6=95.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGAAGATCAAAGAGCTGC
R:
CTTCTGGAACTCCGTTTCCCG
Band lengths:
147-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]