RnoALTA0025961-4/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2474369-2474913:-
Coord C1 exon
chr3:2474720-2474913
Coord A exon
chr3:2474398-2474529
Coord C2 exon
chr3:2474369-2474397
Length
132 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
CTTTTACTCTGTTACCCTAGGTG
3' ss Score
9.17
Exon sequences
Seq C1 exon
GGGAAGTTAGTGGGTGTGAGGTTCTGGTCGGGCTGCGCGGTCTGTCCGGCGTGTGCGGGATGCAGGTTCCACAGCTTCTGGTGCTTTTCGGTAGCCAGACTGGCACAGCTCAGGACGAGGCGGAGAGGCTGGGCCGCGAGGCCCGGCGCCGGCGGCTAGGTTGCCGCGTGCAAGCTTTGGACTCTTACTCCGTG
Seq A exon
GTGAAGGTGGTGGGATGCGGTTCAGGGAGGGCACTGATCAGGGCCGCCAGAGACCTTACACCTACCTGTGTCTTGTCCTTGAGGCGAATCTCATTAGGGAGCCCCTGGTGATATTTGTTTGTGCGACTACAG
Seq C2 exon
GCCAAGGAGACCCTCCTGACAACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616-0-3,0-2,0-1,0-0-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PU(26.8=82.2)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGTTAGTGGGTGTGAGG
R:
TCATGTTGTCAGGAGGGTCTC
Band lengths:
221-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]