RnoALTA0026738-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000019322 | Notch1
Description
notch 1 [Source:RGD Symbol;Acc:3187]
Coordinates
chr3:3912954-3914288:-
Coord C1 exon
chr3:3914140-3914288
Coord A exon
chr3:3913056-3913170
Coord C2 exon
chr3:3912954-3913055
Length
115 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
CCTGCCGCCCCTGCCCGCAGGTG
3' ss Score
12.99
Exon sequences
Seq C1 exon
CTCCATCGTCTACCTGGAGATCGACAACCGGCAGTGTGTACAGTCATCCTCGCAATGCTTCCAGAGCGCCACCGATGTGGCTGCCTTCCTAGGTGCTCTTGCCTCCCTCGGCAGCCTCAATATCCCCTACAAGATCGAAGCCGTAAAGA
Seq A exon
GTGAGACGGTGGAGCCTCCGCTGCCCTCACAGCTGCACCTCATGTACGTGGCGGCAGCTGCCTTCGTGCTCCTGTTCTTTGTGGGCTGTGGGGTGCTGCTGTCCCGCAAGCGCAG
Seq C2 exon
GCGGCAGCATGGCCAGCTCTGGTTCCCTGAGGGTTTCAAAGTGTCAGAGGCCAGCAAGAAGAAGCGGAGAGAACCCCTCGGCGAGGACTCAGTCGGCCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019322-32-33,32-32-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF076847=NODP=FE(79.4=100)
A:
NA
C2:
PF076847=NODP=PD(14.3=12.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTGGAGATCGACAACCG
R:
TTGAGGCCGACTGAGTCCTC
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]