RnoALTA0027413-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000042407 | Obp2a
Description
odorant binding protein 2A [Source:RGD Symbol;Acc:1588212]
Coordinates
chr3:2911522-2912288:+
Coord C1 exon
chr3:2911522-2911632
Coord A exon
NA
Coord C2 exon
chr3:2912187-2912288
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CCTGCCCCACCTCCTCACAGGGA
3' ss Score
9.84
Exon sequences
Seq C1 exon
TTCATGGCAAGAAGACTGTTCATGTGGAAAAGACATCAGTGGAGGGGCACTACATTTTCTACTGCGAAGGACTGCACAACGGGAAGTCGTTTGGGATGGGAAAACTCATGG
Seq A exon
NA
Seq C2 exon
GGAGAAACCCTGAGGAAAACCCGGAGGCTATGGAAGAATTTAAGAAATTCATACAGCGCATGGAACTCCAAGAGGAAAACATGTTTGTGCCAGAGATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042407-4-4,4-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.314
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(26.6=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(24.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGGCAAGAAGACTGTTCATGT
R:
TCTGATCTCTGGCACAAACATGT
Band lengths:
211-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]