RnoALTA0027607-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000005021 | Orc4
Description
origin recognition complex, subunit 4 [Source:RGD Symbol;Acc:735212]
Coordinates
chr3:33053496-33055512:-
Coord C1 exon
chr3:33055464-33055512
Coord A exon
NA
Coord C2 exon
chr3:33053496-33053531
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
ACATTTCTCAATCTGCACAGACA
3' ss Score
6.51
Exon sequences
Seq C1 exon
GGAAGCTTTGCTGAAAACCTTTCGTTTCTTCTGGAAGCTTTGCAGAAAG
Seq A exon
NA
Seq C2 exon
ACACCAATAGCAGTTATTGGCCTTACATGTAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005021-13-16,13-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(10.3=100)
A:
NA
C2:
PF131911=AAA_16=PD(28.4=86.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTTTGCTGAAAACCTTTCGT
R:
AGTCTACATGTAAGGCCAATAACTGC
Band lengths:
82-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]