RnoALTA0027701-1/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:85002255-85002610:+
Coord C1 exon
chr10:85002255-85002399
Coord A exon
NA
Coord C2 exon
chr10:85002528-85002610
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
GAAACTTCGGGTTCACGCAGTTT
3' ss Score
2.43
Exon sequences
Seq C1 exon
GCCAAGTACTGGAGTTCTAACATCCATGAGGTACAAGGTGCGGTGCTTAGCAGGAGTGGCCGCGTCCTCCACCGCCTCTTCGGGAAGTGGCATGAGGGACTGTACCGAGGCCCCCCACCGGGTGGGCAGTGCATTTGGAAACCCA
Seq A exon
NA
Seq C2 exon
TTTGCCCTGGAGTTGAATGAGCTGACGGCAGAGCTGAAGAGGACGCTGCCTTCCACTGACACACGGCTACGGCCTGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473-26-33,26-32,26-31,26-30-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.7=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGGACTGTACCGAGGC
R:
GTAGCCGTGTGTCAGTGGAAG
Band lengths:
124-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]