RnoALTA0027753-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51811941-51813696:+
Coord C1 exon
chr7:51811941-51812066
Coord A exon
NA
Coord C2 exon
chr7:51813588-51813696
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
CATACGTGTTTTTTAAGCAGGCC
3' ss Score
6.04
Exon sequences
Seq C1 exon
CTGATAAGTGTGACGACAGCTTTGTCCACCGGGATTGTATCAGTTGCTGCCCACCGAGCTGCACGTTTGACAAGCAGTGTCTTGGGAGCAATCTTCACTGCCTTGACGGATGCTACTGTGCAGATG
Seq A exon
NA
Seq C2 exon
GCCTCATAATGGACAATGGAACTTGCATCTCTTTGGAGAGCTGCCCGTGTAGTTTTCATGGGTTAGCTTATTCGGTTGGCTCAAAAATTGAACAAGAGTGCACTGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316-10-13,10-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=FE(65.6=100)
A:
NA
C2:
PF0182612=TIL=PD(21.9=37.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTTGACGGATGCTACTG
R:
ACCCATGAAAACTACACGGGC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]