RnoALTA0028600-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022593 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:RGD Symbol;Acc:1308307]
Coordinates
chr19:43118177-43119064:-
Coord C1 exon
chr19:43118916-43119064
Coord A exon
chr19:43118259-43118289
Coord C2 exon
chr19:43118177-43118258
Length
31 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTGGGGGTTTTCATTTTCAGTTT
3' ss Score
8.3
Exon sequences
Seq C1 exon
TCCACTGGGGACCAGGCATTAGAAAGTCTGCAGTACCTTTTCTCCAATGACCTAGATGTGCCTGTAGGCCACATTGTTCACACTGGCATGCTCAATGAATATGGAGGGCACGAAAATGACTGCAGCATTGCTCGCCTGACCAAACGCAG
Seq A exon
TTTCTTCATGATCTCTCCAACTGATCAGCAG
Seq C2 exon
GTCCACTGTTGGGCCTGGCTTCACAAGTACTTGCCGAAAGACAGCAACTTGCTGCTGGAAGACGTCACCTGGAAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022593-22-22,22-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(22.5=100)
A:
NA
C2:
PF0157116=GCV_T=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGGCACGAAAATGACTG
R:
ACTTCCAGGTGACGTCTTCCA
Band lengths:
124-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]