RnoALTA0028910-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000018874 | Phf19
Description
PHD finger protein 19 [Source:RGD Symbol;Acc:1310390]
Coordinates
chr3:13975790-13978224:-
Coord C1 exon
chr3:13978180-13978224
Coord A exon
chr3:13975976-13975978
Coord C2 exon
chr3:13975790-13975975
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
TCTTTCTCCTCCGGTGTCAGCAG
3' ss Score
4.33
Exon sequences
Seq C1 exon
TGGTGGCCAGACTCCAAGTGGGACCGGCTGACGCGCTGCCTCGCG
Seq A exon
CAG
Seq C2 exon
AAGCTGATGGAGACGCAAGCTCTGGAACCAGGGACTCAGGAAGCCTTTGGTGCCACCAGCCCTAACAAGGGGGCCCCGTCTAAGACCAAAAAGAACTTCAAAGACTTGATGTCTAAGGTGACAGAGGGACAGTTTGTGCTATGCCGGTGGACTGACGGGCTATACTACCTTGGCAAGATCAAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018874-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.433
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGCCAGACTCCAAGTG
R:
CACCAAAGGCTTCCTGAGTCC
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]