RnoALTA0029501-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000008129 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:RGD Symbol;Acc:1309777]
Coordinates
chr3:46517927-46522018:-
Coord C1 exon
chr3:46521934-46522018
Coord A exon
NA
Coord C2 exon
chr3:46517927-46518040
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
GGTTGTCTCTTCATTTTTAGACA
3' ss Score
8.23
Exon sequences
Seq C1 exon
GACACAAGAAAGGCAGTTCTGGATCGGATTTAATAAAAGGAACCCACTGAATGCCGGTTCTTGGGAGTGGTCTGACGGGTCTCCT
Seq A exon
NA
Seq C2 exon
ACAATGCTTATTTTGAAGAAGATGCAAAAAACTGTGCTGTGTATAAGGCAAACAACACACTGTTGCCCTCGAACTGTGCTTCCAAACACGAGTGGATATGCAAAATTCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008129-16-19,16-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.2=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(36.9=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTTGGGAGTGGTCTGACG
R:
TTTGGAAGCACAGTTCGAGGG
Band lengths:
115-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]