RnoALTA0030387-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000012218 | Poteg
Description
POTE ankyrin domain family, member G [Source:RGD Symbol;Acc:1359470]
Coordinates
chr16:68820333-68822157:-
Coord C1 exon
chr16:68822122-68822157
Coord A exon
chr16:68820367-68820369
Coord C2 exon
chr16:68820333-68820366
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CATTTTATGTTTTTCTTTAGCAG
3' ss Score
7.43
Exon sequences
Seq C1 exon
AACTAGAAGTTGAACCCAATCCCTCCTGCATTTTAG
Seq A exon
CAG
Seq C2 exon
AACAAGTAGATGCTGGCGATGACTCATTAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012218-8-10,8-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]