RnoALTA0031283-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010217 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:RGD Symbol;Acc:1595906]
Coordinates
chr3:11217363-11221774:+
Coord C1 exon
chr3:11217363-11217555
Coord A exon
NA
Coord C2 exon
chr3:11221462-11221774
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CTCCTTCGTTTTGACAGAAGCCC
3' ss Score
-1.72
Exon sequences
Seq C1 exon
GAACAATTGGGACCCCAGGCGTCAGAGAGCATTGTCGCTGAGCTCTGCAGACAGCACCGATGCCAAGCGCACTCAGGAGGAAGGAAAAGACTGGAGTGGAACAGCAGGTGTGTCCCGTGTCGTCCGAAAGGTGCCAGAGCCTCAGCCTCCTTCCAGGAAGCTTCACAGCTGGGCCTCAGGCCCCGACTACCAG
Seq A exon
NA
Seq C2 exon
CCCACAATGGGCAGCATGTTCCGCCCACAGTCCATCGAGGACAAGGAGGACAAGCCACCCCCACGGCAGAAGTTCATCCAGTCAGAGATGTCCGAGGCCGTGGAACGAGCCCGAAAGCGCAGGGAAGAAGAGGAGCGCCGGGCCCGGGAGGAAAGGCTAGCTGCCTGTGCTGCCAAACTCAAGCAGCTAGACCAGAAGTGCAGGCAGGCTCAGAAGGCCAGTGAGACACCGAAACCAGTGGAAAAGGAGGTCCCCCGATCCCCGGGCATTGAGAAGCTCTCCCCACCAGAGAACGGCCCTGTTGTCCGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010217-18-24,18-23-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCAGGAAGCTTCACAGC
R:
GTCCTCCTTGTCCTCGATGGA
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]