RnoALTA0031625-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000015550 | Ptgds
Description
prostaglandin D2 synthase [Source:RGD Symbol;Acc:3433]
Coordinates
chr3:2687164-2687533:-
Coord C1 exon
chr3:2687417-2687533
Coord A exon
NA
Coord C2 exon
chr3:2687164-2687261
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
CTTCTTTATCTACCAGGCAGAGC
3' ss Score
0.78
Exon sequences
Seq C1 exon
ACTGGGGCAGCTTCCACTCCCTCTCAGTGGTAGAAACCGACTACGATGAGTACGCGTTCCTGTTCAGCAAGGGCACCAAGGGCCCAGGCCAGGACTTCCGCATGGCCACCCTCTACA
Seq A exon
NA
Seq C2 exon
AGCCCAGCTTCTGAAGGAGGAACTGAAGGAGAAATTCATCACCTTTAGCAAGGACCAGGGCCTCACAGAGGAGGACATTGTTTTCCTGCCCCAACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015550-7-11,7-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(26.9=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGAGTACGCGTTCCTGTT
R:
GTTCCTCCTTCAGAAGCTGGG
Band lengths:
97-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]