RnoALTA0032160-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000037039 | RGD1306186
Description
similar to RIKEN cDNA 4930569K13 [Source:RGD Symbol;Acc:1306186]
Coordinates
chr5:99009273-99177093:+
Coord C1 exon
chr5:99009273-99009580
Coord A exon
chr5:99032364-99032549
Coord C2 exon
chr5:99032550-99177093
Length
186 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GCCCAAGTGGGTGTCTCCAGCTG
3' ss Score
2.2
Exon sequences
Seq C1 exon
CCCTCTTTAGAAGAAGACACAATGAACGTCTACTCTCCACCTACCCTCCTGAAGCTGGCAAGACAGAGGTTACTGAGGGAGGAGGCCTTGGCCATTTCTGCTCTCAAAGACCTGCCCTATATGATGTTCCCAGTGATGTTTGAGGAGGCCTTCATTGATGGACGTACAAAGATCTTGACATCTATGATAACCTTGTGGCCCTTTCCATACCTTTCTGTAGGAATGAATATAAATAACCTCAACCTGGACACTTTGAAGGCTGTGCTTGAGGGGCTAGATATACTGATTTCACAAAAGGTTCGCTCCAG
Seq A exon
CTGTTGATTTGACTTCAAAAATTCCATCCTCGATAGTGAGGATTGACACATCAAAAGTGCCACCTCCCAAGTCAAAAATGAGCACATTCCTTTCAGCCCCGACCTTCTTCTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATAATTCGAAGTACGTTGAGGCCAGCAATAGTTCCAG
Seq C2 exon
CATCTTTTGTTGCCTGTCGCTGAGAGTCATTGAAGTAAGCTGGCACGGTGACCACGGCATTGGTAACAGTCTTTCCAAGGTAAGCTTCTGCAATTTCCTTCATTTTTGTCAGAACCATTGAAGACACTTCCTCAGGATAGAAACTTTTTGTCTCCCCTTTGTATTCGACTTGGACCTTGGGCCTGCCTGCATCGTTCACCACCATGAAGGGCCAGTGCTTCATGTCAGACTGAACAACAGCATCATCGAACCTACGTCCGATCAGACATTTGGCATCAAAAACTGTGTTGGTGGGGTTCATTGCAACCTGATTCTTGGCTGCATCCCCAATTAATCGTTCTGTGTCGGTGAAAGCAACATAGCTCGGCGTGGTGCGGTTACCCTGGTCATTGGCAATTATTTCCACCTTTCCATGCTGGAAGACACCCACACAGGAGTAGGTGGTGCCAAGATCAATGCCAACTGCAGGTCCCTTAGACATGGTTGCTTGCGTGTAGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000037039-1-11,1-10,1-9-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGATGTTTGAGGAGGCC
R:
AGACTGTTACCAATGCCGTGG
Band lengths:
251-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]