RnoALTA0032163-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010152 | RGD1306233
Description
similar to hypothetical protein MGC29761 [Source:RGD Symbol;Acc:1306233]
Coordinates
chr3:7050925-7051953:-
Coord C1 exon
chr3:7051743-7051953
Coord A exon
chr3:7051004-7051064
Coord C2 exon
chr3:7050925-7051003
Length
61 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CATCAATCAAATTCTTCCAGGCT
3' ss Score
4.83
Exon sequences
Seq C1 exon
CAACAGGACGCCCTGCCGCAGTAGCCACAGACTTGACTGTCCTGGGCTAGTTTCCTGTGGGAGGCCAAATGTCTGAAGAAAACCCCCAAGAGTGCGCCGAGCCGGTGGAGCCCAAGGCTAAGCCTGCCCCAGAGAAAACGAGCGACTACTACCGCATTAGCGAGAAGCTCCCAGACAGGTTCAACAACCCGGGGTGGTTTCATGGCTACAG
Seq A exon
GCTATGACTTGGCTGACTTATTTTGAGGCTGGATGGGAAACAGTGTATCTCTCTTCCACAG
Seq C2 exon
TACCAATGAAGCTGTTTCCATGTACAGGACCAGTAACCAAACCTATGGGAGCAGAGCTCCCACAGCGCATGAGATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010152-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.741
Domain overlap (PFAM):
C1:
PF148921=DUF4490=PU(43.9=97.9)
A:
NA
C2:
PF148921=DUF4490=FE(24.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGAGAAAACGAGCGAC
R:
GCTCTGCTCCCATAGGTTTGG
Band lengths:
142-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]