RnoALTA0032802-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000016795 | Rabl6
Description
RAB, member RAS oncogene family-like 6 [Source:RGD Symbol;Acc:1307615]
Coordinates
chr3:2808556-2809367:-
Coord C1 exon
chr3:2809100-2809367
Coord A exon
chr3:2808723-2808727
Coord C2 exon
chr3:2808556-2808722
Length
5 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
ACCAACTGCTCTCTTTCCAGGGC
3' ss Score
10.82
Exon sequences
Seq C1 exon
GTCCTCCACCAAGGCCTCACATCCACAAAAGAAGGGAGCCCCCACTCGAGGCATAACACCGTGGTCAGATGGTCTTAGCACTGGCTTGGGGCCCGAACTCAGCAGTACCAAGCCACCCACTGATGGTTCTCAAAGACCCCAGGAAGGGAAGGACAAACAGGTGTCATCAGAGAGCGATCCTGAGGGTCCCATTGCTGCCCAGATGCTGTCATTTGTCATGGATGACCCTGACTTTGAAAGCGATGAGTCGGACACCCAGAAGAGAGTG
Seq A exon
GGCAG
Seq C2 exon
GTTCCCAGTAAGAGAAGACCTCTCTGATGTAACTGATGAGGATACTGGCCCTGCTCAGCCACCCCCACCCTCCAAGTTCCCAGTCCCTGCTTTCAGGCTGAAGAATGACTCAGATCTCTTTGGGCTGGGCCTGGAGGAGCTGGGACCCAAGGAAAGCAGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016795-29-41,29-40-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGACACCCAGAAGAGAGTG
R:
GGACTGGGAACTTGGAGGGT
Band lengths:
107-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]