RnoALTA0032816-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000049033 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:RGD Symbol;Acc:1305912]
Coordinates
chr7:141295384-141298078:-
Coord C1 exon
chr7:141297990-141298078
Coord A exon
chr7:141295579-141295595
Coord C2 exon
chr7:141295384-141295578
Length
17 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TGCTACTTGGATTATTGAAGTTT
3' ss Score
1.47
Exon sequences
Seq C1 exon
AAAGATGGATACTACAATGGTGAATCTGTGGACTCTGTTTGAGCAGCTTGTGCGCCGGCTGGAGATTATCAATGAAGGAAATGAAAGCA
Seq A exon
TTTTTGCCTGTCCTCAG
Seq C2 exon
TTGAATTCATCCAGGTTGTAAAGGACTTCGAGGACTTCCGAAAGAAATGTCAAAGAACCAACCAGGAGCTGGAGAAATTCAAAGATCTGTTGTTGAAGGCAGAGACTGGGCGGAGTGCCCTGGACGTCAAGCTGAAGCACGCCCGTAACCAAGTGGATGTGGAGATCAAACGGAGGCAACGAGCTGAGGCCGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049033-9-4,9-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF059116=DUF869=PU(12.2=58.6)
A:
NA
C2:
PF059116=DUF869=FE(48.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGACTCTGTTTGAGCAGC
R:
TCGGAAGTCCTCGAAGTCCTT
Band lengths:
104-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]