RnoALTA0033364-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000866 | Rbmx
Description
RNA binding motif protein, X-linked [Source:RGD Symbol;Acc:1565256]
Coordinates
chrX:159887008-159887667:-
Coord C1 exon
chrX:159887553-159887667
Coord A exon
NA
Coord C2 exon
chrX:159887008-159887040
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CGTGATTATGGTCATTCCAGTTC
3' ss Score
3.66
Exon sequences
Seq C1 exon
CTCCTGTGTCACGTGGAAGAGATGGTTATGGAGGCCCACCACGAAGAGAGCCCCTGCCTTCTCGTAGAGATGTTTATTTGTCCCCGAGAGATGATGGATATTCCACTAAAGACAG
Seq A exon
NA
Seq C2 exon
TTCACGAGATGACTATCCATCAAGAGGCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000866-7-10,7-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF080816=RBM1CTR=PD(80.0=92.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGTGTCACGTGGAAGAG
R:
GCCTCTTGATGGATAGTCATCTCG
Band lengths:
143-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]