RnoALTA0033680-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002347 | Rgl1
Description
ral guanine nucleotide dissociation stimulator,-like 1 [Source:RGD Symbol;Acc:1308947]
Coordinates
chr13:70070756-70174565:-
Coord C1 exon
chr13:70174222-70174565
Coord A exon
NA
Coord C2 exon
chr13:70070756-70070919
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTATTC
5' ss Score
2.56
3' ss Seq
GTATTTTATTTTTTCAGCAGATT
3' ss Score
6.62
Exon sequences
Seq C1 exon
GTGCTGCCGCCGTCGGTGCCAGCCGCTTGTTGTTGGGGTCCGGTGTGAAGTGTGGGTGGTCGGACTTAAGCGTGGGGTGGGATGGACTGGCTGCAGAACCTAGTCCCCTGCAGTCAGCGGGAGAATGAGGCGGAGTGATGCCCAGCACGAAACTAGTGATCGGAGCCCTCCATTCGGACCGAGCGCCGCCGGGGGCTGCGTTCCAGAGCTGAGAGCCCCTTCCGGGGCTTGGGATCTTGGCACGCTGTCGGTGGGAGGTCCCCAAGGACGGAGTCGAAAGGTCACTTCTTACCTGTCAGTGCTGGGGGACAGCATCGCGGCCGGACCTGCAGAATCTCAACTCG
Seq A exon
NA
Seq C2 exon
ATTCGTAATGCCTCCTGCTTACCTCTTTCAAGATGGAGGAGAAATCTGTGGGAGAACCTACTCAAGTGGTGTCTAAAGTCAAACTTTCCACAAAAGTAGAAAACCCAGGACACTGGCTGGTGGATGATCACGCTCGAATATGGGAAGTTTTAAAGACAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002347-0-4,0-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGACCTGCAGAATCTCAAC
R:
ACCACTTGAGTAGGTTCTCCCA
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]