RnoALTA0034429-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000014272 | Rpl35
Description
ribosomal protein L35 [Source:RGD Symbol;Acc:1303007]
Coordinates
chr3:23294883-23296878:-
Coord C1 exon
chr3:23296797-23296878
Coord A exon
NA
Coord C2 exon
chr3:23294883-23294983
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCAGGGAAAGAAGTACAAGCCC
3' ss Score
-21.59
Exon sequences
Seq C1 exon
ACGAGTCGTACGCAAATCCATCGCCCGTGTCCTCACTGTCATTAATCAGACTCAAAAGGAAAACCTCAGGAAATTCTACAAG
Seq A exon
NA
Seq C2 exon
CCCCTGGACCTGCGACCCAAGAAGACAAGAGCCATGCGCCGCCGGCTCACCAAGCATGAAGAGAAGCTGAAGACCAAGAAGCAGCAGCGGAAGGAGCGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014272-5-11,5-10,5-9-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0083118=Ribosomal_L29=PD(28.8=60.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGTACGCAAATCCATCGC
R:
CTTGTCTTCTTGGGTCGCAGG
Band lengths:
108-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]