RnoALTA0035308-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013123 | Scube2
Description
signal peptide, CUB domain and EGF like domain containing 2 [Source:RGD Symbol;Acc:1563998]
Coordinates
chr1:174461373-174462031:-
Coord C1 exon
chr1:174461909-174462031
Coord A exon
NA
Coord C2 exon
chr1:174461373-174461486
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TGTTTTGTCCTGTCTAGAAGTAA
3' ss Score
1.2
Exon sequences
Seq C1 exon
ACACCAACGAGTGCAGCGTCAACAACGGAGGCTGCCAGCAAGTTTGCGTCAACACAGTGGGTGGCTATGAGTGCCAGTGTCATCCAGGGTACAAGCTCCACTGGAATAAAAAAGACTGTGTGG
Seq A exon
NA
Seq C2 exon
TAAAGGGCGTCCTGCCCACTAGCACGACACCCCGTGTGTCCCTGCACTGTGGTAAAAGTGGTGGAGGAGACAGGTGCTTCCTAAGATGCCATTCTGGCATTCACCTCTCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013123-12-13,12-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTACAAGCTCCACTGGAA
R:
TTTACCACAGTGCAGGGACAC
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]