RnoALTA0035536-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000004852 | Sel1l2
Description
SEL1L2 ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:1311278]
Coordinates
chr3:134281904-134282847:-
Coord C1 exon
chr3:134282719-134282847
Coord A exon
chr3:134282005-134282007
Coord C2 exon
chr3:134281904-134282004
Length
3 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
GACTGAATGACTCTTGCCAGCAG
3' ss Score
1
Exon sequences
Seq C1 exon
GACATTCACTTGGCCAGAAGATTATACGACATGGCCGCTCAGACAAGCCCAGATGCTCACATACCCGTGTTCTTTGCCCTTATGAAACTGGAAACTATGCATTTTCTCCAAGATATCCTGTTTTTTAAT
Seq A exon
CAG
Seq C2 exon
TTTACCACGAAATGGAAATGGCTGAAACTGGACAGCACCATTGGACCATACTGGGACTTATTAGTGATTGGCCTAATTGTTGTTGTGCTGATCTTCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004852-25-27,25-26-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(41.2=32.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATACCCGTGTTCTTTGCCC
R:
TGTCCAGTTTCAGCCATTTCCA
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]