RnoALTA0036950-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010451 | Slc34a3
Description
solute carrier family 34 member 3 [Source:RGD Symbol;Acc:708551]
Coordinates
chr3:2452685-2453152:-
Coord C1 exon
chr3:2453029-2453152
Coord A exon
chr3:2452772-2452795
Coord C2 exon
chr3:2452685-2452771
Length
24 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
CTTGGGAATTCTATATACAGCCC
3' ss Score
4.3
Exon sequences
Seq C1 exon
ATCTAGGATTGGGCCTGGGTCTTCCACTTCTTGAAATCCATGCCGAATTCCCTTGCTGGCGACCAGGTCCCCAACCCTACTCTGGATGCAATTGGCCTGGTGGACTGGAGTCTGAGAAATGCAG
Seq A exon
CCCTACCTGACCTGACCCCTGCAG
Seq C2 exon
GGACCTCTGGTTCCACCCCAGGCTTAGAGGAGGGAGGCACAGACCCCTGGACCTTCTCTCAGCTGAAGAATACTGACCAACTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010451-7-6,7-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=NA C2=0.459
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGGATGCAATTGGCCTG
R:
TCAGCTGAGAGAAGGTCCAGG
Band lengths:
112-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]