RnoALTA0036975-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000018649 | Slc35c2
Description
solute carrier family 35 member C2 [Source:RGD Symbol;Acc:1311250]
Coordinates
chr3:161805597-161806210:-
Coord C1 exon
chr3:161806138-161806210
Coord A exon
chr3:161805694-161805765
Coord C2 exon
chr3:161805597-161805693
Length
72 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CCGCACTGTCCCCCCTCTAGCGT
3' ss Score
7.89
Exon sequences
Seq C1 exon
GTACACAATGACCAAATCCTCTGCTGTGCTCTTTATCCTGATCTTCTCTCTGATCTTCAAGCTGGAGGAGCTG
Seq A exon
CGTGCAGCGCTGGTCCTGGTGGTCCTGCTCATTGCTGGCGGCCTCTTCATGTTTACCTATAAGTCCACGCAG
Seq C2 exon
TTCAACGTGGAGGGCTTTGCCTTGGTGCTGGGGGCTTCGTTCATTGGCGGCATCCGCTGGACCCTTACACAAATGCTTCTTCAGAAAGCTGATCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018649-14-22,14-21,14-20-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0315111=TPT=PU(18.5=49.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGACCAAATCCTCTGCTGT
R:
CAGCTTTCTGAAGAAGCATTTGTGT
Band lengths:
160-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]