RnoALTA0037120-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000020951 | Slc4a1
Description
solute carrier family 4 member 1 [Source:RGD Symbol;Acc:3710]
Coordinates
chr10:90303913-90304454:-
Coord C1 exon
chr10:90304244-90304454
Coord A exon
chr10:90304120-90304122
Coord C2 exon
chr10:90303913-90304119
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTACAC
5' ss Score
4.06
3' ss Seq
CCTTTTCCTATCCTCTACAGCAG
3' ss Score
8.76
Exon sequences
Seq C1 exon
GTGTTCCGCGTTACCGCCTCCCTGGCGCAGAGCCGAGGGGAGCTGCTGAGCTCCCTGGATAGCTTTCTGGACTGTAGCCTGGTGCTGCCGCCCACAGAGGCCCCTTCAGAGAAAGCTCTGCTCAACCTGGTGCCCGTGCAGAAGGAGTTGCTTAGGAAGCGGTACTTGCCCAGACCTGCCAAGCCAGACCCCAACTTGTACGAGGCATTAG
Seq A exon
CAG
Seq C2 exon
ACGGGGGAAAGGAGGGCCCCGGTGACGAAGACGACCCTCTAAGGCGCACCGGCCGGATCTTTGGAGGCCTGATCCGTGATATCCGGCGCCGGTATCCTTACTACCTGAGTGACATCACCGATGCGCTCAGTCCCCAGGTGCTGGCTGCTGTCATCTTCATCTACTTTGCTGCCTTGTCACCTGCGGTCACCTTCGGCGGTCTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020951-17-21,17-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=NA C2=0.197
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(14.8=50.7)
A:
NA
C2:
PF0095516=HCO3_cotransp=PU(29.7=80.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAACTTGTACGAGGCATT
R:
ACGGATCAGGCCTCCAAAGAT
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]