RnoALTA0037167-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11868929-11870978:-
Coord C1 exon
chr15:11870891-11870978
Coord A exon
NA
Coord C2 exon
chr15:11868929-11868981
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
AGTAACTGTTCTTCCTCCAGGAG
3' ss Score
9.18
Exon sequences
Seq C1 exon
GTTTTTGTTTCTGTTACTGGGCCCAGCAGGAAAGGCTCCACAGTACCATGAAATTGGCAGATCCATAGCAACTCTAATGACAGATGAG
Seq A exon
NA
Seq C2 exon
GAGAGTGGGATCCTTCCATACGCATAGAGCCACCAAAAAGTGTTCCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957-18-16,18-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.163
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.8=100)
A:
NA
C2:
PF075658=Band_3_cyto=PD(13.4=73.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTTCTGTTACTGGGCCCA
R:
GAGAAGGAACACTTTTTGGTGGC
Band lengths:
135-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]