RnoALTA0037439-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007377 | Slit3
Description
slit guidance ligand 3 [Source:RGD Symbol;Acc:69311]
Coordinates
chr10:20509431-20511736:+
Coord C1 exon
chr10:20509431-20509585
Coord A exon
chr10:20511451-20511468
Coord C2 exon
chr10:20511469-20511736
Length
18 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACG
5' ss Score
9.65
3' ss Seq
GCCCCGCCTTCCTCCCTCAGGCA
3' ss Score
10.89
Exon sequences
Seq C1 exon
TGTGGAGACGGTGAATGATGGCCAGTTTCACAGTGTGGAGCTGGTGATGCTAAACCAGACCCTGAACCTGGTGGTAGACAAAGGAGCCCCCAAGAGCCTGGGGAAGCTCCAGAAGCAGCCAGCAGTGGGCATCAACAGTCCCCTCTATCTTGGAG
Seq A exon
GCATCCCCACGTCTACAG
Seq C2 exon
GCCTCTCAGCCTTACGCCAGGGTGCAGACAGGCCGCTGGGCGGCTTCCACGGCTGTATACACGAAGTGCGCATCAACAACGAGTTGCAGGATTTCAAAGCCCTCCCACCCCAGTCCCTGGGGGTCTCTCCCGGCTGCAAATCCTGCACTGTGTGTCGTCACGGCCTGTGTCGCTCCGTGGAGAAGGACAGCGTAGTGTGTGAGTGCCATCCGGGATGGACTGGTCCACTGTGTGATCAGGAAGCCCAGGACCCCTGCCTTGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007377-35-41,35-40,35-39-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=FE(40.3=100)
A:
NA
C2:
PF0221019=Laminin_G_2=PD(25.6=34.4),PF126612=hEGF=WD(100=13.5),PF0000822=EGF=PU(31.6=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATCAACAGTCCCCTCTA
R:
TGTTGATGCGCACTTCGTGTA
Band lengths:
107-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]